GlobalChem Bacteria

GlobalChem has the concept of a Bacteria Pythonic Model that can hopefully be connected down to SMILES as we evolve. Bacteria can be classified in many different ways but for GlobalChem there is exact classifiers per some parameters. See the function to get all the classifiers out.

Import the Package

from global_chem_extensions import GlobalChemExtensions
bioinformatics = GlobalChemExtensions().bioinformatics()

Initialize a Bacteria Instance

bacteria = bioinformatics.initialize_globalchem_bacteria(
        name='staphylococcus',
        cell_wall_composition='thick_peptidoglycan',
        genus_name = '',
        species_name = '',
        family = 'chlorobiaceae',
        gram_positive = False,
        gram_negative = False,
        inner_membrane = None,
        outer_membrane = None,
        shape = None,
        nutrition_type = None,
        respiratory = None,
        environment = None,
        antisera = None,
        universal_phylogenetic_tree_rna_sequence = None,
        taxonomic_hierarchy = None,
 )

Get Bacteria Classifiers

bacteria.get_classifiers()